Example1: Calculate coverage over complete chromosome
java -jar covcal-1.0.5-jar-with-dependencies.jar -r
region.chr1.complete.tab -i
chr1.1.bam,chr1.2.bam,chr1.3.bam,chr1.4.bam
File
region.chr1.complete.tab
should look like this:
nonsense 1 249250621 nothing
This is a tab-delimited table, only second and third columns are of
interest (define start and stop of region).
